BtaEX6091125 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61970271-61973525:+
Coord C1 exon
chr19:61970271-61970439
Coord A exon
chr19:61972311-61972369
Coord C2 exon
chr19:61973409-61973525
Length
59 bp
Sequences
Splice sites
3' ss Seq
AGTCTTCAATCTTCTTTCAGAAT
3' ss Score
9.2
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATGAAAGTGGCCAGCGGCATTCACCACTGTTTTTCCTGAAGTCTTCCTTTTGGTCCCAACACAAAAACACTCACCATGAAGTCTTTGGGAATGAAATGAATTCTGAGCTCTCCTGCGATGATTCTTTCGAGCCAGTGTCTCCAGAGTTCCACAGAAAAGAAGCCATAAG
Seq A exon
AATCAGAAATCTTAGAAAAGAATATAAAGGAAAACCTGAAAAAGTAGAAGCATTGCAAG
Seq C2 exon
AAACAGGCATATGTCTTGACGTCTATGAAGGCCAGCTCACGGCGATTCTTGGCCACAGCGGAGCTGGCAAATCCTCGCTGCTGAGCATCCTTGGCGGCTGGTCTGCTTGCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937-'8-11,'8-10,9-11=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000522=ABC_tran=PU(26.0=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAGCTCTCCTGCGATGA
R:
CTCCGCTGTGGCCAAGAATC
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]