BtaEX6091526 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021581 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr24:20705438-20729654:-
Coord C1 exon
chr24:20729364-20729654
Coord A exon
chr24:20719561-20720441
Coord C2 exon
chr24:20705438-20705596
Length
881 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCTGTGTACTTTCAGGTT
3' ss Score
12.47
5' ss Seq
AAGGTATCG
5' ss Score
8.7
Exon sequences
Seq C1 exon
CCAGCGCCGGGGAGCCTGGGCCTGAACCGGAGGCAGACGTGGAGGCAGAGGTGGGGCAGGTGGCCGATGAGGCCGGCCAGGAGCTAGCCCCTGCCAGCGCGGGAGCAGAGAGCGAGGTGGAGCGGGCCCTGGAGCCCGAGCACGAGGAGCGAGCCTCCCTGAGCGAGAAGGAGCGGCAGAATGAGGCAGTGAATGAGCGTGACAACTGCTCGGCCTCCAGCGTCTCGTCCTCCAGCAGCACGTTGGAGAGGGAGGACAGGGAGGACAAGCTCTCCCGGGACAAGGGCACAG
Seq A exon
GTTTGTGGTCTGCGGGTGTTCAGGATGCGGGTGTAAATGAGCAGTGTGGCGACATCCTCACCAGCAAACGGTTCATGCTGGACATGCTGTATGCCCATAACAGAAAGCCCGCGGATGACGAGGAGAAAGGGGAGGGCGAGGCCGCAAGGACCGCGCAAGGGGCGGAGGCGGTAGCCAGCCTGGCCAGCAGAATATCCACCCTGCAGGCCAGTTCCCTGGCCCAGGATGAGAGCGTCAAGAGGGTGGACGTTGGTTGTCTGGACAACAGGGGCAGTGTGAAAGCCTTTGCAGAGAAATTCAACAGCGGGGACCTAGGGAGGGGGTCCGTCTCCCCTGACGCGGAGCCCAATGACAAGGTCGCAGAGAAGACATCAGCTCAGCCCAAGACGGAATCTGACTACATCTGGGACCAGCTCATGGCCAATCCCAGGGAGCTCAGAATCCAGGACATGGATTTCACTGACCTGGGTGAGGAGGACGACATTGACGTCCTGGACGTGGACCTGGGTCACCCGGAGGCCCCAGGGCCGCCTCCCCCGCCCCCACCCACCTTTCTGGGTCTGCCGCCCCCACCCCCTCCGCCCCTGCTGGACAGCGTGCCTCCCCCTCCAGTCCCCGGTAATTTATTGGCTCCCCCTCCAGTATTCAACGCTCCTCAGGGCTTAGGGTGGCCCCAGATACCCAGGGGTCAACCGGCATTCACCAAGAAAAAGAAGACCATCCGTCTATTCTGGAACGAAGTCCGGCCTTTTGAGTGGCCGTGTAAGAACAATGGCCGCTGCAGAGAATTCCTGTGGTCGAAACTGGAACCCATTAAGGTGGACACCTCCAAGCTGGAGCACCTGTTTGAGTCTAAATCGAAGGAACTGTCCGTCTCCAAG
Seq C2 exon
AAAACGGCTGCAGATGGAAAAAAGCAGGAGATCATTGTCCTGGACTCCAAGAGGAGCAATGCTATTAATATTGGCCTGACGGTCCTGCCCCCTCCAAGAACGATTAAGATAGCCATTTTGAATTTTGATGAATATGCCTTAAACAAAGAAGGGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021581-'28-28,'28-27,30-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.588 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
PF0218118=FH2=PU(17.2=21.8)
C2:
PF0218118=FH2=FE(14.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGTGGAGGCAGAGGTG
R:
CAGGACCGTCAGGCCAATATT
Band lengths:
344-1225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]