RnoEX0036013 @ rn6
Exon Skipping
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:17282002-17300326:+
Coord C1 exon
chr18:17282002-17282280
Coord A exon
chr18:17288845-17289722
Coord C2 exon
chr18:17300168-17300326
Length
878 bp
Sequences
Splice sites
3' ss Seq
TCGTTCCCATGTCCTTTCAGGTT
3' ss Score
11.79
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
TAAGTGGTAAGGACCGAGAGCCTGAACTGGAGGCGGAAGCTGGGCAGGGTGCTGATGAAGCCAGCCGGGACATAGCGTCTGCCCACAGGGAAGCAGGAAGCCAAGAAGAGCCAGCGCTGGAGCTAGAGCCTGAGGAAAGAGCGTCACTGAGTGAGAAAGAGAGGCAAAACGAAGAGGTGAATGAGAGGGACAACTGTTCTGCCTCCAGCATCTCGTCCTCCAGCAGCACCTTGGAGAGGGAAGAGAAGGAGGACAAACTGTCTGGAGACAGACCAACTG
Seq A exon
GTTTGTGGTCTGCCAGCCTTCAGGATGTGGGTGTAAATGGACAGTGTGGTGACATCCTTACCAGCAAAAGGTTCATGCTGGACATGCTGTATGCCCATAACAGAAAGTCCACAGAAGACGAAGAGAAAGGTGATGGCGAACCTGGGAGGTCTGCACAGGAGGTGGAAGCGGTGGCCAGCCTCGCCACCAGGATCTCCACTCTGCAGGCCAACTCTCAGGCCCCGGAGGAGAGCATCAAGAGGGTGGACATTGGCTGCTTGGACAACCGGGGCAGCGTGAAGGCATTTGCCGAGAAATTCAACAGTGGAGAAGTAGGGAGAGGCTCCGTCTCTCCTGATGCTGAGTCTCAGGACAAGGTCCCGGATACACCACCAGCACAGCTGAAAACTGAGTCTGATTACATCTGGGACCAGCTCATGGCCAATCCAAGGGAGCTCAGAATCCAAGACATGGATTTTACAGACCTGGGGGAGGAGGATGATATCGATGTTCTGGACGTGGATCTCGGCCACCGGGAAGCCCCAGGACCACCCCCTCCACCTCCTCCCACCTTCCTGGGTTTGCCACCCCCACCCCCTCCACCCCTATTGGACAGTGTGCCTCCCCCACCAGTCCCCGGTAATTTATTGGCTTCTCCTGTGTTCAACACTCCTCAGGGCTTAGGGTGGTCCCAGGTACCCAAGGGTCAGCCAGCATTCACCAAGAAAAAGAAGACGATCCGACTGTTCTGGAATGAAGTCCGGCCCTTTGAGTGGCCAAGTAAGAACAATCGACGGTGCAGGGAATTCCTGTGGTCAAAACTGGAACCCATTAAGGTGGACACTTCCAGACTAGAGCACCTGTTTGAGTCCAAGTCCAAGGAGCTGTCTGTCACCAAG
Seq C2 exon
AAAACAGCTGCAGATGGTAAAAGGCAGGAGATCATTGTTCTGGATTCCAAGAGGAGCAACGCCATCAACATTGGCCTGACTGTACTGCCCCCTCCAAGGACGATTAAGATAGCCATTTTGAACTTTGATGAGTATGCCTTAAACAAAGAAGGGATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230-'51-44,'51-41,52-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.652 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
PF0218118=FH2=PU(17.2=21.8)
C2:
PF0218118=FH2=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAAGGACCGAGAGCCTGAA
R:
AATGTTGATGGCGTTGCTCCT
Band lengths:
346-1224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]