DreEX0032801 @ danRer10
Exon Skipping
Gene
ENSDARG00000061904 | fhod3b
Description
formin homology 2 domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-081028-61]
Coordinates
chr16:18832955-18847305:-
Coord C1 exon
chr16:18846814-18847305
Coord A exon
chr16:18843211-18844124
Coord C2 exon
chr16:18832955-18833113
Length
914 bp
Sequences
Splice sites
3' ss Seq
CTTACAATTTGGACTCTTAGGTC
3' ss Score
6.31
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
GAACTGTGACTGAGAAAAGTTGTACGGTGCAGACAGCAGTTGTGCGTTCTTTATCAGAACCTCCCTCTGCATCTCCACCAGTGTCCCCATCGCAACCAGAGGAGCAACAGAGACCTGTCGACCCATCCGACATCATTCTATCTCTATCTCCAACAAACTCTGAACCAGAAAGAACAGAGAAAGGGGAGAAAAAAGAGGATGCTGAAGCAGAGGAGTGTGAGGAAACAGTGGTGGGTGAAGTGCAAGATGAAAAGAAGGAAGAACCAGAAGGAAACTTTGAGGATGAGACTAATGTGACGGGTGCAGAAGACTGTGAGAGGGAGAAGACGTTGGATAGAGAAGTAGAGGAGAGTGCCATCCTAAGTGAAAAGGAGAAGCAGAATGAAGAACTGAATGAGAAAGATAACTGCTCTGCCTCCAGCATCTCTTCAGCCAGCAGCACTCTGGAGAGAGAAGAAAGAGAGGAGAAACATGTCAGTGACAGCAACTCAG
Seq A exon
GTCAATGGGCAGACTGTATAAATACAGCAGACAACAACGATCAGTGCAACAAAGTTCTTAACAGCAAACGTTTCATGCTGGACATGCTGTATGCCCAAAACAAGGAAGGAGAGGAAGATGAGAAAGAAAAGGAGAACGAAAATGAGAAATGTTTAGGTCAGGACTCTACTGTGACAAGCCTTGCTAGCCGAATTTCCACTCTGGAATCACATCGGCAGACATGTGAGGACAACTTGAAGAAACTGGAAGTGGAGCATCTGGAAAACCAGGGCAGCGTGCGGGCTGTAGCTGAGAAATTTGGAGATTTGGTCAAAGGCATGTTATCACCTCATGACTTGGAGAATTGTGGGAAGGAAAAGCAGCAAACACAGGAAAAGCCTCCACCTGCTCCATCACCAGCACCCCCAAAAAAGGAGTCGGACCACATATGGGACCAGCTAATGGCAACGCCACGGGAGCTTCGTATCAAAGAGCTGGATTTCACAGACTTGGGAGAGGAGGACGATGTGGATATTTTGGACGTGGGGAACATGATTGGGTCAGGTGACCTCACTCCACCTCCTCCACCACCGCCCTGCTTGCCCAACCTTCCTCCCCCGCCACCTTTATTTGGATGCCCTCTGCCTCCCCCAGTCCCTGGCATGATGATGCCCCCTCCACCACCCTTTTTGGCGTCAAAACCTCCAGCACAATTGGGATCTCCTCAGCTTAGTCGAGGAGAACCACCGCTCTTCCAAAAGAAGAAGAAGACCATCAGGCTATTCTGGAATGAGGTGAGACCGATTGACTGGCAGTACACCAACCACAAGAGATGCAAGGAGTCACTCTGGTCCAAACTGGATCCCATCAAACTGGACACAGCCAAATTGGAAAACCTCTTTGAGACGAAATCTAAGGAGCTGCCAGTTACAAAG
Seq C2 exon
AAAACAGCAGCAGATGGTAAGCGTCAGGAGATCATCATTCTGGATTCCAAAAGAAGTAATGCTATCAACATTGGCCTGACGGTCCTGCCGCCTCCTCGCACCATCAAAACAGCCATCCTCAACTTTGATGAGTACGCCTTGAGCAAAGAGGGCATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061904-'21-26,'21-24,22-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.725 C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
PF0218118=FH2=PU(17.2=21.0)
C2:
PF0218118=FH2=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGGTGAAGTGCAAGAT
R:
GACCGTCAGGCCAATGTTGAT
Band lengths:
349-1263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]