GgaEX1025096 @ galGal4
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr2:83397687-83415347:+
Coord C1 exon
chr2:83397687-83397901
Coord A exon
chr2:83408497-83409386
Coord C2 exon
chr2:83415189-83415347
Length
890 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGATTGCAGGTC
3' ss Score
8.34
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
ATACAAATACTTGGAGAGATTGGCAGCCGAGGAGTATGAGAAGGAGCTGAAGAGTCGAAGTGTAAGCCGAGGCAGAAGTGAGCTGTCCTTGAACCTGAGATCTCCTTCAGCCCCATCCTCACCTGTACCCAAGTGCGTCAGCCCAGCATCCATAGAGTCCCAGGAAGAGCTGAAGACCCCCTCTACCCCCTGTGGAACTCCTCAGCACTCAGAAG
Seq A exon
GTCCATGGTCCCAGACCATTCAGGATGCTGGCGTGAATGAGCAGTGCAGCAAGATCCTCAACAACAAGCGGTTTATGCTGGACATGCTGTATGCGCATAACAAAAAGCCCAAGGATGAAGAGGAGAAGGAGCTGGAGGCGAAGGAGGAAAAGAAGGAGACGGAGGAAAGCGAGGAGTCCCTCACTAGTCTAGCCAGTAGGATCTCTATCCTTCAGGCCACAAAGCAGGCCAAAGATGAAAGTGTCAAAAAGATGGAGATCGGAAACCTGGACAACCAAGGCAGCGTGAAAGCCTTTGCGGAAAAATTCAACAGTGGTGAGCTGGCCAAGGGGACAGCCTTGCCTGAAGATGAAATCAGTGAACAGGTCCCTGAGAAAACACCAGCACAGCCAAAGAAGGAATCTGACTACATCTGGGATCAACTCATGGCTAATCCTAGAGAACTGAAAATCAAAGACATGGATTTTACAGACTTGGGGGAGGAGGATGATGTAGATGTGTTGGACATGGATATGGGTCCTGGGGACTCCCTTGTTCCCCCTCCTCCACCTCCACCTTCTTTCCTGGGTTTGCCTCCTCCACCACCTCCCCCACTGTTTGGATGTCCTCCTCCACCTCCACCCTCTGCTAATTTATTGGCTCCTCCTCCGCTGTTCAGCACTCCTCAGGGTTTAGGGTCACCCCAGGTTTCTAGGGGTCAGCCAGCATTTATAAAGAAGAAGAAAACCATCCGTCTGTTTTGGAACGAGGTACGGCCATTTGAGTGGCAGTGTAAAAACAACAAACGCTGCAGAGAATTCCTGTGGTCGAAACTGGAACCCATTAAGGTGGACACTTCCAAACTGGAGCATCTCTTTGAGTCGAAGTCCAAGGAACTGCCTGTCACAAAG
Seq C2 exon
AAAACTGCTGCAGATGGGAAGCGACAGGAGATCATTGTGTTGGACTCAAAACGAAGCAATGCTATTAATATTGGCTTGACTGTGCTACCCCCTCCACGGACGATCAAGACTGCTATTCTGAATTTTGACGAATATGCCTTAAACAAGGAAGGAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.737 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
PF0218118=FH2=PU(17.0=21.2)
C2:
PF0218118=FH2=FE(14.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTGGCAGCCGAGGAGTAT
R:
CCTTGTTTAAGGCATATTCGTCA
Band lengths:
347-1237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]