MmuEX7008337 @ mm10
Exon Skipping
Gene
ENSMUSG00000034295 | Fhod3
Description
formin homology 2 domain containing 3 [Source:MGI Symbol;Acc:MGI:1925847]
Coordinates
chr18:25085334-25101684:+
Coord C1 exon
chr18:25085334-25085612
Coord A exon
chr18:25090030-25090907
Coord C2 exon
chr18:25101526-25101684
Length
878 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTCGTGTCCTTTCAGGTT
3' ss Score
12.98
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
TAAGTGGTAAGGACCACGAGCCTGAACTGGAGGCAGAAGCTGGGCAAGGTGCTGATGAAGCCAGCCAGGATATAGCATCTGCCCACAGGGGAGCAGAGAGCCAAGAAGAGCCGGTGCTGGAGCTAGAGCCAGAGGAAAGAGCTTCACTGAGTGAAAAAGAGAGGCAAAACGAAGAGGTGAATGAGAGGGACAACTGTTCTGCTTCCAGCATCTCGTCCTCCAGCAGCACCTTGGAGAGGGAAGAGAAGGAAGACAAACTGTCTGAAGACAGGGCGACCG
Seq A exon
GTTTGTGGTCCACCAGCCTTCAGGATGTGGGTGTGAATGGACAGTGTGGTGACATCCTTACCAGCAAAAGGTTCATGCTGGACATGCTGTATGCCCATAACAGAAAATCCACAGAAGATGAGGAAAAAGATGACGGCGAGCCTGGGAGGTCTGCGCAGGAGGTGGAGGCAGTGGCCAGCCTCGCCACCAGGATATCCACTCTGCAGGCCAACTCTCAGGCCCCAGAGGAGAGCATCAAGAGGGTGGACATTGGCTGTCTAGACAACCGGGGCAGTGTGAAGGCATTTGCTGAGAAATTCAACAGTGGAGAAGTAGGGAGGGGTGCCATCTCTCCTGATGTGGAGTCTCAGGACAAGGTCCCGGATACACCCCCAGCACAGCTGAAGACTGAGTCTGATTACATCTGGGACCAGCTCATGGCCAATCCGAGGGAGCTCAGAATCCAAGACATGGATTTCACAGACCTAGGGGAGGAGGACGATATCGATGTTTTGGATGTGGATCTTGGCCACCGGGAAGCCCCAGGGCCACCCCCTCCACCCCCTCCCACCTTCCTGGGTTTGCCACCCCCACCCCCTCCACCCCTGTTGGACAGCGTGCCTCCCCCACCAGTCCCCGGTAATTTATTGGCTTCTCCTGTGTTCAACACTCCTCAGGGCTTAGGGTGGTCCCAGGTACCCAGGGGTCAGCCAGCGTTCACCAAGAAAAAGAAGACGATCCGGCTGTTCTGGAACGAAGTCCGGCCCTTTGAGTGGCCAAGTAAGAACAATCGCCGGTGCAGGGAATTCCTGTGGTCAAAACTGGAACCCATTAAGGTGGACACTTCCAGACTCGAGCACCTGTTTGAGTCCAAGTCTAAGGAGCTGTCTGTCACCAAG
Seq C2 exon
AAAACGGCTGCAGATGGTAAACGGCAGGAGATCATTGTTCTGGATTCCAAGAGGAGCAATGCCATCAACATCGGCCTGACGGTGCTGCCCCCTCCAAGGACAATTAAGATAGCCATTTTGAACTTTGATGAGTATGCCTTAAACAAAGAAGGGATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034295-'29-28,'29-27,38-28=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.628 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
PF0218118=FH2=PU(17.2=21.8)
C2:
PF0218118=FH2=FE(14.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCAAGGTGCTGATGAAG
R:
TAATTGTCCTTGGAGGGGGCA
Band lengths:
346-1224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types