HsaEX0025784 @ hg19
Exon Skipping
Gene
ENSG00000134775 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:26178]
Coordinates
chr18:34289058-34310767:+
Coord C1 exon
chr18:34289058-34289354
Coord A exon
chr18:34297795-34298678
Coord C2 exon
chr18:34310609-34310767
Length
884 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCATGTACTTTCAGGTT
3' ss Score
11.63
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
CAAGTGCCGGGGATCCTGAACCCGAATCAGAGGCAGAACCGGAAGCAGAGGCAGGGGCGGGGCAGGTTGCTGATGAAGCTGGCCAGGACATAGCCTCTGCCCACGAGGGTGCAGAGACTGAAGTGGAGCAGGCACTAGAGCAAGAGCCGGAAGAAAGAGCCTCCCTCAGTGAAAAAGAGAGGCAGAACGAGGGGGTGAACGAGAGGGACAACTGCTCTGCCTCCAGCGTCTCGTCCTCCAGCAGCACGTTGGAGAGGGAGGAGAAGGAGGACAAGCTCTCCAGGGACAGGACAACTG
Seq A exon
GTTTGTGGCCCGCAGGTGTCCAGGATGCAGGTGTAAATGGACAGTGTGGCGACATCCTCACCAACAAACGGTTCATGCTTGACATGCTGTATGCCCATAACAGGAAGTCTCCGGATGATGAGGAGAAGGGGGATGGGGAGGCTGGGAGGACCCAGCAGGAGGCAGAGGCGGTAGCCAGCCTTGCTACCAGGATATCCACCCTGCAGGCCAACTCTCAGACCCAGGATGAGAGTGTCAGGAGGGTGGATGTCGGCTGTTTGGACAATCGGGGCAGTGTGAAAGCATTTGCTGAGAAATTCAACAGTGGGGACCTGGGGAGAGGTTCCATCTCCCCTGATGCTGAGCCCAATGACAAGGTCCCAGAAACAGCGCCGGTGCAGCCGAAGACAGAGTCTGATTACATCTGGGACCAGCTCATGGCCAATCCAAGAGAGCTCAGAATCCAAGACATGGATTTCACTGACCTGGGGGAGGAGGATGACATTGATGTCCTAGATGTGGACCTGGGTCACAGGGAGGCCCCTGGGCCACCTCCCCCACCCCCACCCACCTTTCTGGGTTTGCCGCCCCCACCCCCTCCGCCCCTGTTGGACAGCATTCCTCCCCCTCCTGTCCCTGGTAATTTATTGGTTCCTCCTCCTCCAGTGTTCAACGCTCCTCAGGGCTTAGGGTGGTCCCAGGTACCCAGGGGTCAGCCCACATTCACTAAGAAAAAGAAGACCATCCGTTTGTTCTGGAATGAAGTTCGGCCTTTTGACTGGCCATGTAAAAACAACCGACGCTGCAGAGAATTCCTGTGGTCAAAACTGGAACCCATTAAGGTGGACACTTCCAGACTGGAGCACCTGTTTGAGTCTAAATCCAAGGAACTGTCTGTCTCAAAG
Seq C2 exon
AAAACTGCTGCAGATGGAAAAAGGCAAGAGATCATTGTTCTGGATTCCAAGAGGAGTAACGCCATCAATATTGGTCTGACGGTGCTGCCCCCTCCAAGGACGATTAAGATCGCCATTTTGAATTTTGATGAGTATGCCTTAAACAAAGAAGGAATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134775_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.708 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
PF0218118=FH2=PU(17.2=21.7)
C2:
PF0218118=FH2=FE(14.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCCGAATCAGAGGCAGA
R:
TGATGGCGTTACTCCTCTTGGA
Band lengths:
348-1232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)