BtaEX6092650 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr24:50075588-50087508:-
Coord C1 exon
chr24:50087427-50087508
Coord A exon
chr24:50080610-50080717
Coord C2 exon
chr24:50075588-50075697
Length
108 bp
Sequences
Splice sites
3' ss Seq
CACTTCCTTTCCCACCGCAGCCT
3' ss Score
8.42
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GCAGACGACGAGAGGAATTACCACATCTTTTACCAGCTCTGTGCGGCTGCCAGTCTTCCGGAATTTAAGGAGCTGGCACTAA
Seq A exon
CCTGTGCTGAGGACTTCTTCTACACGTCACAGGGAGGAAACACAGTCATCGAGGGTGTGGATGATGCTGAGGACTTTGAGAAGACTCGACAAGCCTTCACGCTCGTTG
Seq C2 exon
GAGTGAGAGAGTCCCATCAGATAAGCATTTTTAAGATAATTGCTTCCATCCTGCACCTCGGAAATGTGGAGATTCAAGCCGAGCGCGATGGTGAATCCTGTAGAGTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019455-'9-16,'9-13,10-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.0=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACGACGAGAGGAATTACC
R:
TCTACAGGATTCACCATCGCG
Band lengths:
186-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]