DreEX6084447 @ danRer10
Exon Skipping
Gene
ENSDARG00000062003 | myo5b
Description
myosin VB [Source:ZFIN;Acc:ZDB-GENE-031219-7]
Coordinates
chr21:22464169-22466673:-
Coord C1 exon
chr21:22466592-22466673
Coord A exon
chr21:22464372-22464479
Coord C2 exon
chr21:22464169-22464278
Length
108 bp
Sequences
Splice sites
3' ss Seq
CACTCACTCTCATGTTTTAGCCA
3' ss Score
7.49
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GCTGAAGAGGAGAGGAACTACCACATCTTCTACCAGCTCTGTGCTTCATGCTCTCTGCCAGAGTTTAAGGATCTTACCTTGA
Seq A exon
CCAGTGCAGAAGACTTCACTTACACGTCTCTCGGTGAGAACATTTTCATTGAGGGAGTGAATGATGCCGAGGACCTTGTGAAGACGAGAGAAGCTCTTACGATGCTTG
Seq C2 exon
GTGTAAAAGAAAACCACCAAATGAGCATCTTTAAGATAATTGCCTCCATTTTGCACCTGGGGAACGTGGAGATTGTGCAGGAGAGAGATGGAGAATCCTGCCATATCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062003-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.0=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGAGGAGAGGAACTACCA
R:
ATGGCAGGATTCTCCATCTCTCT
Band lengths:
186-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]