MmuEX6002400 @ mm10
Exon Skipping
Gene
ENSMUSG00000025885 | Myo5b
Description
myosin VB [Source:MGI Symbol;Acc:MGI:106598]
Coordinates
chr18:74627171-74638151:+
Coord C1 exon
chr18:74627171-74627252
Coord A exon
chr18:74634461-74634568
Coord C2 exon
chr18:74638042-74638151
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCTTGCCTCCCGCAGCGT
3' ss Score
10.95
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GCGGATGACGAGAGGAACTACCACATCTTTTACCAGCTCTGTGCTGCTGCCAGCCTTCCTGAATTTAAAGAGCTCGCCCTAA
Seq A exon
CGTGCGCAGAGGACTTTTTCTATACAGCCCATGGAGGAAACACGACCATCGAGGGTGTGAATGATGCAGACGACTTTGAGAAGACTAGACAAGCCCTCACACTCCTGG
Seq C2 exon
GAGTGCGGGATTCCCATCAAATAAGCATCTTTAAGATAATTGCTTCTATCTTGCACCTGGGAAGTGTGGAGATTCAGTCTGAGCGGGACGGGGATTCCTGCAGCATTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025885-'24-27,'24-17,28-27=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.108 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.0=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGACGAGAGGAACTACCAC
R:
TGAAATGCTGCAGGAATCCCC
Band lengths:
190-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types