HsaEX0041206 @ hg38
Exon Skipping
Gene
ENSG00000167306 | MYO5B
Description
myosin VB [Source:HGNC Symbol;Acc:HGNC:7603]
Coordinates
chr18:49980444-49990520:-
Coord C1 exon
chr18:49990439-49990520
Coord A exon
chr18:49984718-49984825
Coord C2 exon
chr18:49980444-49980553
Length
108 bp
Sequences
Splice sites
3' ss Seq
TATTTCCTCGCCTCCCACAGCAA
3' ss Score
7.65
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
GCAGATGATGAGAGGAATTACCACATCTTTTACCAGCTCTGTGCTGCTGCCGGTCTTCCAGAATTTAAAGAGCTTGCACTAA
Seq A exon
CAAGTGCAGAGGACTTTTTCTATACATCACAGGGAGGAGACACTTCCATCGAGGGTGTGGACGATGCTGAGGACTTTGAGAAGACTCGACAAGCCTTCACACTCCTCG
Seq C2 exon
GAGTGAAAGAGTCCCATCAGATGAGCATTTTTAAGATAATTGCTTCTATCTTGCACCTTGGAAGTGTGGCGATTCAGGCTGAGCGTGATGGTGATTCCTGTAGTATATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167306_MULTIEX2-4/4=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.104 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.0=100)
A:
PF0006316=Myosin_head=FE(13.4=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGATGAGAGGAATTACCACA
R:
ACTACAGGAATCACCATCACGC
Band lengths:
186-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development