RnoEX6059262 @ rn6
Exon Skipping
Gene
ENSRNOG00000014104 | Myo5b
Description
myosin Vb [Source:RGD Symbol;Acc:621347]
Coordinates
chr18:70596838-70606379:+
Coord C1 exon
chr18:70596838-70596919
Coord A exon
chr18:70602777-70602884
Coord C2 exon
chr18:70606270-70606379
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCCTGCCTCCCACAGCAT
3' ss Score
10.45
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GCGGATGATGAGAGGAACTACCACATCTTTTACCAGCTCTGTGCTGCGGCCAGCCTTCCTGAGTTTAAGGAGCTCGCACTAA
Seq A exon
CATGTGCAGAGGACTTTTTCTACACCGCCCATGGAGGAAACACGACCATCGAGGGTGTAGATGATGCAGAGGACTTTGAGAAGACAAGACAAGCCCTCACACTCCTTG
Seq C2 exon
GAGTTCGGGAGTCCCATCAAATCAGCATCTTTAAGATAATTGCTTCTATCTTGCACCTTGGAAGTGTGGAGATCCAGGCCGAGCGGGATGGGGACTCCTGCAGCATATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014104-'13-12,'13-11,15-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.108 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.0=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGATGATGAGAGGAACTACC
R:
ATATGCTGCAGGAGTCCCCAT
Band lengths:
190-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]