BtaEX6092664 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr24:50000966-50014200:-
Coord C1 exon
chr24:50013967-50014200
Coord A exon
chr24:50002337-50002421
Coord C2 exon
chr24:50000966-50001114
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCCCCGCTGCTCTTTTTCAGCGA
3' ss Score
10.04
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
AACAAAGAGCTCAAGACGCTGTCGGAGCAGCTGTCAGCAATCACCTCCACACACACCATGGAAGTGGAGAAGCTGAAGAAGGAGGTGGCCTGCTACCAGCAGAGCCAGGGTGAGGACAGAGGCCCGCAGTTGCAGGAGGAGGTGGAGAGCCTGCGGACCGAGCTGCAGAGGGCCCACTCAGAGCGCAAGGTCCTGGAGGACACCCACACCCGGGAGAAGGATGAGCTGAGGAAG
Seq A exon
CGAGTTGCAGACCTGGAACAAGAAAATGCACTCTTGAAAAATGAGAAGGAGCAGCTTAACAACCAGATCCTGTGCCAGTCTAAAG
Seq C2 exon
ATGAGTTTGCCCAGAACTCTGTCAAGGAAAACCTCATGATGAAGAAGGAGCTGGAGGAGGAGCGCTCCCGTTATCAGAACCTCGTGAAGGAGTATTCCCGGCTGGAGCAGAGATACGACAACCTTCGGGATGAGATGACCATCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019455-'28-42,'28-41,29-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.628 A=0.793 C2=0.620
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAAGGATGAGCTGAGGA
R:
AGGATGGTCATCTCATCCCGA
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]