HsaEX6038910 @ hg38
Exon Skipping
Gene
ENSG00000167306 | MYO5B
Description
myosin VB [Source:HGNC Symbol;Acc:HGNC:7603]
Coordinates
chr18:49878945-49895174:-
Coord C1 exon
chr18:49894941-49895174
Coord A exon
chr18:49880371-49880455
Coord C2 exon
chr18:49878945-49879090
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCCCTATTGCTCTCTTCCAGCGA
3' ss Score
10.22
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AACAAAGAGTTCAAGACACTTTCAGAGCAGTTGTCCGTGACCACCTCAACATACACCATGGAGGTAGAGCGGCTGAAGAAGGAGCTGGTGCACTACCAGCAGAGCCCAGGTGAGGACACCAGCCTCAGGCTGCAGGAGGAGGTGGAGAGCCTGCGCACAGAGCTGCAGAGGGCCCACTCGGAGCGCAAGATCTTGGAGGACGCCCACAGCAGGGAGAAAGATGAGCTGAGGAAG
Seq A exon
CGAGTTGCAGACCTGGAGCAAGAAAATGCTCTCTTGAAAGATGAGAAAGAACAGCTCAACAACCAAATCCTGTGCCAGTCTAAAG
Seq C2 exon
ATGAATTTGCCCAGAACTCTGTGAAGGAAAATCTCATGAAGAAAGAACTGGAGGAGGAGCGATCCCGGTACCAGAACCTTGTGAAGGAATATTCACAGTTGGAGCAGAGATACGACAACCTTCGGGATGAAATGACCATCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167306-'53-49,'53-47,56-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.436 A=0.759 C2=0.551
Domain overlap (PFAM):
C1:
PF097894=DUF2353=PU(10.9=20.5)
A:
PF097894=DUF2353=FE(19.0=100)
C2:
PF097894=DUF2353=FE(32.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGAGGAGGTGGAGAG
R:
GATCGCTCCTCCTCCAGTTCT
Band lengths:
169-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains