MmuEX6002387 @ mm10
Exon Skipping
Gene
ENSMUSG00000025885 | Myo5b
Description
myosin VB [Source:MGI Symbol;Acc:MGI:106598]
Coordinates
chr18:74707864-74714959:+
Coord C1 exon
chr18:74707864-74708097
Coord A exon
chr18:74713548-74713632
Coord C2 exon
chr18:74714826-74714959
Length
85 bp
Sequences
Splice sites
3' ss Seq
TACTTGGTGATCTCTTTCAGCGA
3' ss Score
6.54
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AACAAAGAGTTCAAGACTCTGTCAGAGCAGCTGTCTGCAGTCACCTCCAGTCATGCCGTGGAGGTGGAGAAGCTGAAGAAGGAGCTGGCACATTACCAGCAGAACCAGGAGGCTGATACCAGCCTTCAGCTGCAGGAGGAGGTTCAGAGCCTGCGCACTGAACTACAGAAGGCTCATTCGGAGCGCAGGGTCCTGGAGGATGCTCACAACAAGGAGAATGGCGAGCTGAGAAAG
Seq A exon
CGAGTTGCAGACCTGGAACATGAAAATGCCCTCTTGAAGGATGAAAAAGAATACCTTAACAACCAAATCCTGTGCCAGTCAAAAG
Seq C2 exon
CTGAATCTTCGCAGAGCTCTGTGGAAGAGAACCTCCTGATGAAGAAGGAGCTGGAGGAGGAACGGTCCAGGTACCAGAACCTCGTGAAGGAGTACTCCCAGCTGGAGCAGAGATATGAGAACCTTCGGGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025885-'52-48,'52-42,57-48=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=0.695 C2=0.717
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF118403=DUF3360=PU(52.4=84.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCTGCAGGAGGAGGTTC
R:
GTTCCTCCTCCAGCTCCTTCT
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types