DmeEX6008745 @ dm6
Exon Skipping
Gene
FBgn0261397 | didum
Description
The gene dilute class unconventional myosin is referred to in FlyBase by the symbol Dmeldidum (CG2146, FBgn0261397). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (3 unique). Gene sequence location is 2R:7500147..7508625. Its molecular function is described by 8 unique terms, many of which group under: binding; protein binding; cytoskeletal protein binding; nucleoside-triphosphatase activity; catalytic activity. It is involved in the biological process described with 9 unique terms, many of which group under: organelle organization; establishment of protein localization; positive regulation of multicellular organismal process; cellular component organization or biogenesis; actin filament-based process. 24 alleles are reported. The phenotypes of these alleles manifest in: reproductive system; adult abdomen; male organism; plasma membrane bounded cell projection; peripheral nervous system. The phenotypic classes of alleles include: lethal - all die before end of embryonic stage; increased mortality; fertile; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages, at stages throughout the pupal period, in stages of adults of both sexes.
Coordinates
chr2R:7504775-7505746:+
Coord C1 exon
chr2R:7504775-7505301
Coord A exon
chr2R:7505364-7505499
Coord C2 exon
chr2R:7505649-7505746
Length
136 bp
Sequences
Splice sites
3' ss Seq
CCGTAAATTTGTATGTTTAGACT
3' ss Score
4.16
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGAGGCTGAATTCAAAAATGTCAAGGCCGCCTGCCAGGACAAGGACAAGCTGATCGAAGCACTTAACAAGCAGTTGGAGGCGGAGCGAGACGAAAAAATGCAGTTGCTGGAGGAGAACGGACATGCTCAAGAGGAGTGGATCAGCCAGAAGCAGACGTGGCGCCAAGAGAACGAGGAGCTGCGCCGTCAGATAGACGAGATAATCGATATGGCAAAGAACGCAGAAGTCAACCAGCGTAACCAGGAGGACCGAATGCTAGCCGAGATTGATAACAGGGAGCTCAACGAGGCCTACCAACGAGCTATTAAGGACAAGGAGGTCATCGAGAACGAAAACTTCATGCTGAAGGAAGAGCTCAGTCGATTAACGGCTGGCAGTTTCAGTTTGCACGCCCGCAAGGCTAGCAACGCCTCCAGCCAAAACGAGGACGATGTGGGATACGCCTCCGCCAAGAACACTCTGGATATCAATCGGCCCCCGGATTTGTTAAGCAAAAATT
Seq A exon
ACTCGTACAATGACTCTACCAGTCTGGTGGTGAAGTTGAGATCCATTCTCGAGGAGGAGAAGCAAAAGCACAAGGTCTTGCAGGAGCAGTACATTAAGTTGTCCAGTCGGCATAAGCCCACCGAGGATTCCTTCCG
Seq C2 exon
CGTCTCCGAGCTTGAGGTAGAGAATGAAAAGCTGCGCAGCGAGTACGATCAGCTGCGAACGAGCATTAAACACGGTGTTGAGATCAACGAGCTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0261397-'12-12,'12-11,13-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.461 A=0.268 C2=0.265
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
FBpp0088684

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0088685, FBpp0088686
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAAGGAGGTCATCGAGA
R:
GTTCGCAGCTGATCGTACTCG
Band lengths:
252-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)