MmuEX6067251 @ mm10
Exon Skipping
Gene
ENSMUSG00000034593 | Myo5a
Description
myosin VA [Source:MGI Symbol;Acc:MGI:105976]
Coordinates
chr9:75173952-75180172:+
Coord C1 exon
chr9:75173952-75174200
Coord A exon
chr9:75176518-75176611
Coord C2 exon
chr9:75180024-75180172
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTTGGTGTTTCATTTCATAGCTG
3' ss Score
7.85
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AATAAAGACTACAAATGCCTCATGGAGAAACTGACCAATCTGGAAGGAGTATACAACTCTGAGACTGAAAAACTACGAAATGATGTAGAACGTCTTCAGCTAAGTGAAGAGGAAGCTAAGGTTGCCACTGGGCGGGTCCTTAGTCTGCAGGAAGAAATTGCAAAACTCCGAAAAGACCTGGAACAAACTCGATCAGAGAAAAAGTCTATTGAAGAAAGAGCAGATAAATACAAACAAGAAACTGACCAG
Seq A exon
CTGGTGTCAAACTTGAAGGAAGAAAATACTTTGCTGAAGCAGGAAAAGGAGACCCTCAACCACCGCATTGTGGAGCAGGCGAAGGAGATGACAG
Seq C2 exon
AAACTATGGAGAGGAAGTTAGTAGAAGAGACAAAACAACTGGAGCTTGACCTGAATGATGAGAGGCTGAGGTATCAGAACCTTCTGAATGAGTTCAGTCGCCTGGAGGAGCGCTATGATGACCTCAAGGAAGAGATGACCCTGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034593-'38-40,'38-36,40-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=1.000 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTCCTTAGTCTGCAGGAA
R:
TCAGGTCAAGCTCCAGTTGTT
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types