HsaEX6074844 @ hg19
Exon Skipping
Gene
ENSG00000197535 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:7602]
Coordinates
chr15:52656751-52662614:-
Coord C1 exon
chr15:52662366-52662614
Coord A exon
chr15:52659228-52659321
Coord C2 exon
chr15:52656751-52656899
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTTATTGTTTCATTTCGTAGCTG
3' ss Score
7.82
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AACAAAGACTACAAATGCCTTGTGGAGAAACTAACCAATCTGGAAGGAATATACAACTCTGAGACTGAGAAACTACGAAGTGACTTAGAACGTCTTCAACTAAGTGAAGAGGAAGCGAAAGTTGCCACTGGGCGGGTCCTTAGTCTGCAGGAAGAAATTGCCAAGCTCCGGAAAGACCTGGAGCAAACTCGTTCAGAGAAAAAATGCATTGAGGAACATGCAGATCGATACAAACAAGAAACAGAGCAG
Seq A exon
CTGGTATCAAATCTGAAGGAAGAAAATACTTTGCTGAAGCAAGAAAAAGAAGCCCTCAATCACCGCATCGTGCAGCAGGCTAAGGAGATGACAG
Seq C2 exon
AAACTATGGAGAAGAAGTTAGTAGAAGAAACGAAACAACTGGAACTCGACCTTAATGATGAAAGGCTGAGATATCAGAACCTTCTGAATGAGTTCAGTCGCCTGGAAGAAAGATATGATGACCTCAAGGAAGAGATGACCCTTATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197535-'37-40,'37-39,38-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=0.750 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTCCTTAGTCTGCAGGAA
R:
GGTCGAGTTCCAGTTGTTTCGT
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)