GgaEX6007784 @ galGal3
Exon Skipping
Gene
ENSGALG00000004624 | MYO5A_CHICK
Description
NA
Coordinates
chr10:10052471-10056539:+
Coord C1 exon
chr10:10052471-10052719
Coord A exon
chr10:10053812-10053905
Coord C2 exon
chr10:10056391-10056539
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATATTTTATTATCTCTCTAGCTG
3' ss Score
8.1
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
AACAAAGAGTACAAATCTCTGCTGGAGAAGATGAATAACCTGGAGATCACATACAGTACAGAGACAGAGAAGCTTCGGAGTGATGTGGAGAGGCTTCGGATGAGTGAGGAGGAGGCTAAGAATGCAACCAACCGTGTTCTCAGCCTTCAGGAAGAGATTGCCAAGCTCCGGAAGGAGCTGCACCAGACTCAGACTGAGAAGAAGACAATTGAGGAATGGGCAGACAAATACAAACATGAAACTGAGCAG
Seq A exon
CTGGTGTCGGAACTGAAAGAGCAGAACACATTACTGAAAACAGAAAAGGAGGAGCTGAACCGCCGCATCCATGACCAAGCAAAGGAGATAACAG
Seq C2 exon
AGACAATGGAGAAGAAGCTAGTGGAGGAAACAAAGCAGTTGGAGCTAGACCTGAACGATGAGAGGTTACGGTATCAGAACCTGCTGAATGAGTTCAGCCGCTTGGAGGAGCGGTATGATGATCTCAAGGATGAAATGAACTTAATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624-'30-36,'30-33,31-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=1.000 C2=0.450
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCGTGTTCTCAGCCTTCA
R:
TCAGGTCTAGCTCCAACTGCT
Band lengths:
175-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]