BtaEX6053645 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58097817-58103206:+
Coord C1 exon
chr10:58097817-58098065
Coord A exon
chr10:58100853-58100946
Coord C2 exon
chr10:58103058-58103206
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTTATTGTTTCATTTTATAGCTG
3' ss Score
9.24
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AACAAAGACTACAAATGCCTCATGGAGAAACTGACCAATCTAGAAGGAATATACAACTCGGAGACCGAGAAACTACGAAGTGATTTAGAACGTCTTCAGCTAAGTGAAGAAGAAGCTAAGATTGCTACTGGACGGGTCCTCAGTCTGCAGGAAGAAATTGCCAAGCTACGGAAAGACCTGGAACAAACTCAGTCTGAGAAAAAATCCATTGAGGAACATGCTGATAGATACAAACAAGAAACTGAGCAG
Seq A exon
CTGGTGTCAAATCTGAAGGAAGAAAATACTTTGCTGAAGCAGGAAAAAGAGGTCCTCAATCACCGTATCGTGGAGCAGGCTAAGGAGATGACAG
Seq C2 exon
AGACTATGGAGAAGAAGTTAGTAGAAGAAACAAAACAACTGGAACTCGATCTTAACGATGAAAGGCTGAGATATCAGAACCTTCTGAATGAGTTTAGTCGCTTGGAAGAACGCTATGATGACCTCAAGGAAGAGATGACTTTGATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489-'27-28,'27-27,29-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=0.719 C2=0.480
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTCAGTCTGCAGGAAGA
R:
AGCCTTTCATCGTTAAGATCGAGT
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]