HsaEX6074844 @ hg38
Exon Skipping
Gene
ENSG00000197535 | MYO5A
Description
myosin VA [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr15:52364554-52370417:-
Coord C1 exon
chr15:52370169-52370417
Coord A exon
chr15:52367031-52367124
Coord C2 exon
chr15:52364554-52364702
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTTATTGTTTCATTTCGTAGCTG
3' ss Score
7.82
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AACAAAGACTACAAATGCCTTGTGGAGAAACTAACCAATCTGGAAGGAATATACAACTCTGAGACTGAGAAACTACGAAGTGACTTAGAACGTCTTCAACTAAGTGAAGAGGAAGCGAAAGTTGCCACTGGGCGGGTCCTTAGTCTGCAGGAAGAAATTGCCAAGCTCCGGAAAGACCTGGAGCAAACTCGTTCAGAGAAAAAATGCATTGAGGAACATGCAGATCGATACAAACAAGAAACAGAGCAG
Seq A exon
CTGGTATCAAATCTGAAGGAAGAAAATACTTTGCTGAAGCAAGAAAAAGAAGCCCTCAATCACCGCATCGTGCAGCAGGCTAAGGAGATGACAG
Seq C2 exon
AAACTATGGAGAAGAAGTTAGTAGAAGAAACGAAACAACTGGAACTCGACCTTAATGATGAAAGGCTGAGATATCAGAACCTTCTGAATGAGTTCAGTCGCCTGGAAGAAAGATATGATGACCTCAAGGAAGAGATGACCCTTATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197535-'60-68,'60-65,62-68
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=0.747 C2=0.394
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTCCTTAGTCTGCAGGAA
R:
GGTCGAGTTCCAGTTGTTTCGT
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains