GgaEX6007784 @ galGal4
Exon Skipping
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8306334-8308743:+
Coord C1 exon
chr10:8306334-8306582
Coord A exon
chr10:8307674-8307767
Coord C2 exon
chr10:8308595-8308743
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATATTTTATTATCTCTCTAGCTG
3' ss Score
8.1
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
AACAAAGAGTACAAATCTCTGCTGGAGAAGATGAATAACCTGGAGATCACATACAGTACAGAGACAGAGAAGCTTCGGAGTGATGTGGAGAGGCTTCGGATGAGTGAGGAGGAGGCTAAGAATGCAACCAACCGTGTTCTCAGCCTTCAGGAAGAGATTGCCAAGCTCCGGAAGGAGCTGCACCAGACTCAGACTGAGAAGAAGACAATTGAGGAATGGGCAGACAAATACAAACATGAAACTGAGCAG
Seq A exon
CTGGTGTCGGAACTGAAAGAGCAGAACACATTACTGAAAACAGAAAAGGAGGAGCTGAACCGCCGTATCCATGACCAAGCAAAGGAGATAACAG
Seq C2 exon
AGACAATGGAGAAGAAGCTAGTGGAGGAAACAAAGCAGTTGGAGCTAGACCTGAACGATGAGAGGTTACGGTATCAGAACCTGCTGAATGAGTTCAGCCGCTTGGAGGAGCGGTATGATGATCTCAAGGATGAAATGAACTTAATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624-'43-45,'43-40,44-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=1.000 C2=0.440
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCGTGTTCTCAGCCTTCA
R:
TCAGGTCTAGCTCCAACTGCT
Band lengths:
175-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]