RnoEX0057381 @ rn6
Exon Skipping
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82097375-82104688:+
Coord C1 exon
chr8:82097375-82097623
Coord A exon
chr8:82099887-82099980
Coord C2 exon
chr8:82104540-82104688
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTGGGTTTTTCATTTCATAGCTG
3' ss Score
7.02
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AATAAAGACTACAAATGCCTCATGGAGAAACTGACCAATCTAGAAGGAGTATACAACTCTGAGACTGAAAAACTACGAAATGATGTAGAACGTCTTCAGCTAAGCGAGGAGGAAGCTAAGGTTGCCACTGGGAGAGTGCTTAGTCTGCAGGAAGAAATTGCAAAACTCCGAAAAGACCTGGAACAAACTCGATCGGAGAAAAAGTCCATTGAAGAACGAGCAGATAAATACAAACAAGAAACTGAGCAG
Seq A exon
CTGGTGTCAAACTTGAAGGAAGAAAACACTCTGCTGAAGCAGGAAAAGGAGACCCTCAATCACCTCATGGTGGAGCAGGCTAAGGAGATGACAG
Seq C2 exon
AAACTATGGAGAGGAAGTTAGTAGAAGAAACAAAACAACTGGAGCTCGACCTGAATGATGAGAGGCTGAGGTATCAGAACCTCCTGAATGAGTTCAGTCGTCTGGAGGAGCGCTATGACGACCTCAAGGAAGAGATGACCCTGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866-'31-36,'31-34,32-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=1.000 C2=0.480
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGAGTGCTTAGTCTGCA
R:
TCATTCAGGTCGAGCTCCAGT
Band lengths:
179-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]