DreEX6066373 @ danRer10
Exon Skipping
Gene
ENSDARG00000061635 | myo5aa
Description
myosin VAa [Source:ZFIN;Acc:ZDB-GENE-041027-2]
Coordinates
chr18:39019876-39026251:+
Coord C1 exon
chr18:39019876-39020124
Coord A exon
chr18:39022740-39022833
Coord C2 exon
chr18:39026103-39026251
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTGTGGGATGTTTGTGACAGATG
3' ss Score
5.76
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AACAAGGAGAACCGTTCCATGAGCGAACGTTTGAACACTCTAGAGACCAGCCATGCTGTTGAGTCAGAGCGTATGCGCGCCGAAGTGACGCGTCTGCGGGGAGCAGAGGAGGACGCCAAAAACAACGCCAACAAAGTCACATCTCTTCTGGAGGAGCTGGAACGACTGCGCAAAGACCTGCAGAACACACAGAAGGAGAAGAAAGCCATTGAGGACTGGGCTCAGACCTACCAGGACGAGATGGAAAAG
Seq A exon
ATGATCTCAGAGCTAAAAGAGCAAAACCAGCTGCTGAAGACAGAGAAAAACAACCTAAACCAACTGATCCAGGAACAGAGCCAGCAGTGGACAG
Seq C2 exon
ACAAAATGCAGAGAGCTCTGAAAGAGGAAACCCAGCAGTTAGAAAACGATTTAAACGAGGAGCGATCTCGCTACCAAAATCTCCTCACCGAGCACCTCCGACTAGAGGAGAAATACGACGATTTGAAAGAAGAGATCACACTCGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061635-'29-27,'29-26,31-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.807 A=1.000 C2=0.740
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCAGAACACACAGAAGG
R:
AGGTGCTCGGTGAGGAGATTT
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]