MmuEX6067251 @ mm9
Exon Skipping
Gene
ENSMUSG00000034593 | Myo5a
Description
myosin VA [Source:MGI Symbol;Acc:MGI:105976]
Coordinates
chr9:75021759-75027979:+
Coord C1 exon
chr9:75021759-75022007
Coord A exon
chr9:75024325-75024418
Coord C2 exon
chr9:75027831-75027979
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTTGGTGTTTCATTTCATAGCTG
3' ss Score
7.85
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AATAAAGACTACAAATGCCTCATGGAGAAACTGACCAATCTGGAAGGAGTATACAACTCTGAGACTGAAAAACTACGAAATGATGTAGAACGTCTTCAGCTAAGTGAAGAGGAAGCTAAGGTTGCCACTGGGCGGGTCCTTAGTCTGCAGGAAGAAATTGCAAAACTCCGAAAAGACCTGGAACAAACTCGATCAGAGAAAAAGTCTATTGAAGAAAGAGCAGATAAATACAAACAAGAAACTGACCAG
Seq A exon
CTGGTGTCAAACTTGAAGGAAGAAAATACTTTGCTGAAGCAGGAAAAGGAGACCCTCAACCACCGCATTGTGGAGCAGGCGAAGGAGATGACAG
Seq C2 exon
AAACTATGGAGAGGAAGTTAGTAGAAGAGACAAAACAACTGGAGCTTGACCTGAATGATGAGAGGCTGAGGTATCAGAACCTTCTGAATGAGTTCAGTCGCCTGGAGGAGCGCTATGATGACCTCAAGGAAGAGATGACCCTGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034593-'25-26,'25-25,27-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=1.000 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTCCTTAGTCTGCAGGAA
R:
TCAGGTCAAGCTCCAGTTGTT
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: