DreEX6100638 @ danRer10
Exon Skipping
Gene
ENSDARG00000104235 | myo5c
Description
myosin VC [Source:ZFIN;Acc:ZDB-GENE-131127-196]
Coordinates
chr25:4683035-4684194:+
Coord C1 exon
chr25:4683035-4683215
Coord A exon
chr25:4683946-4684039
Coord C2 exon
chr25:4684131-4684194
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTGTATCATTTAAAGGTC
3' ss Score
8.56
5' ss Seq
GAGGTGCTA
5' ss Score
0.8
Exon sequences
Seq C1 exon
GGTGGCAGAGCACAACAGTGAACTGCAGAAGGAAGACTCGGACAAAGAAATTGTGGCGATAAAAGAGGAAAACCGTAGACTGAGAGAGGAGCGAATCAGACTGCAAACGCAAGTGGAGGAGGACGTGAAGACCAACACAGAACTGCAAGAGCAAATGCTGCAGCTCACCAAACACGTCAAG
Seq A exon
GTCATACCAGATTTACGTAAAGAAATCAACAACCTGCAGATTCAACGAGCTGAAGCTGAAAAAACCCTGAGAGCTCAAAATCTACAAGCCAGAG
Seq C2 exon
CTAAGATGAATCTGATCACGAGGCAGCTGCTTGGTGATGCTACAGAGCAAGATCTCATCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104235-'27-33,'27-32,28-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.689 A=0.312 C2=0.227
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGATAAAAGAGGAAAACCGT
R:
TGTAGCATCACCAAGCAGCTG
Band lengths:
172-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]