GgaEX1038146 @ galGal4
Exon Skipping
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8349849-8350935:+
Coord C1 exon
chr10:8349849-8350013
Coord A exon
chr10:8350237-8350330
Coord C2 exon
chr10:8350872-8350935
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTGTGTGTGTACAGAAA
3' ss Score
8.5
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
AGCAAAGAAAATCACGGCTTGCTGGAACGATTGACTAACCTGGCTTCAACTCATATGAATGACTTGGATACGATTCAGAAACTTGAATCAGAGCTTGAAAAGTTAGCTGCTCAAAAGAGAACCTATGAGGAGAAAGGGAAAAAATATAAAGAGGACAGTGAACAG
Seq A exon
AAAATATTGAAGCTTGAGAGTCAGAATAAGGAGTTACGAGAGCAGAAGGAGACCTTGGAAGTAAAGCTGCAAGAGAAAACGGAGGAAATGAAAG
Seq C2 exon
AGAAAATGGATGACCTCACCAAACAGCTCTTCGATGATGTACGAAAGGAAGAAAGTCAGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641-'26-26,'26-25,27-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.236 A=0.688 C2=0.636
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTGCTGGAACGATTGACT
R:
GCTGTTTGGTGAGGTCATCCA
Band lengths:
177-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]