HsaEX6074818 @ hg19
Exon Skipping
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:7604]
Coordinates
chr15:52524819-52529843:-
Coord C1 exon
chr15:52529679-52529843
Coord A exon
chr15:52527867-52527960
Coord C2 exon
chr15:52524819-52524882
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTCCCCCTTCCCTCTGCTAGAAA
3' ss Score
8.54
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AACAAAGAAAACCATGGGCTGGTGGAGAAGCTGACTAGCCTGGCTGCTCTTCGAGCTGGGGATGTGGAAAAGATTCAGAAGCTGGAAGCAGAACTAGAAAAAGCAGCCACTCACAGGCGAAATTACGAGGAGAAGGGGAAGAGATACAGGGATGCTGTGGAAGAG
Seq A exon
AAATTGGCAAAGCTTCAGAAGCATAATTCAGAACTGGAAACACAGAAAGAACAAATACAGCTGAAGCTTCAAGAGAAGACTGAAGAGTTAAAAG
Seq C2 exon
AAAAAATGGACAACCTCACCAAGCAGCTCTTTGATGATGTACAAAAGGAAGAACGGCAAAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833-'24-25,'24-24,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.500 C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGTGGAGAAGCTGACTA
R:
AAGAGCTGCTTGGTGAGGTTG
Band lengths:
180-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)