HsaEX6074818 @ hg38
Exon Skipping
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52232622-52237646:-
Coord C1 exon
chr15:52237482-52237646
Coord A exon
chr15:52235670-52235763
Coord C2 exon
chr15:52232622-52232685
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTCCCCCTTCCCTCTGCTAGAAA
3' ss Score
8.54
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AACAAAGAAAACCATGGGCTGGTGGAGAAGCTGACTAGCCTGGCTGCTCTTCGAGCTGGGGATGTGGAAAAGATTCAGAAGCTGGAAGCAGAACTAGAAAAAGCAGCCACTCACAGGCGAAATTACGAGGAGAAGGGGAAGAGATACAGGGATGCTGTGGAAGAG
Seq A exon
AAATTGGCAAAGCTTCAGAAGCATAATTCAGAACTGGAAACACAGAAAGAACAAATACAGCTGAAGCTTCAAGAGAAGACTGAAGAGTTAAAAG
Seq C2 exon
AAAAAATGGACAACCTCACCAAGCAGCTCTTTGATGATGTACAAAAGGAAGAACGGCAAAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833-'45-44,'45-42,47-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=0.544 C2=0.273
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGTGGAGAAGCTGACTA
R:
AAGAGCTGCTTGGTGAGGTTG
Band lengths:
180-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains