MmuEX0030553 @ mm9
Exon Skipping
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75124739-75135949:+
Coord C1 exon
chr9:75124739-75124903
Coord A exon
chr9:75126032-75126125
Coord C2 exon
chr9:75135856-75135949
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCTTCCCTTCACTAGAGG
3' ss Score
7.97
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
Exon sequences
Seq C1 exon
AACAGAGAGAACCACGGGCTGGTGGAGAAGCTGACCAGCCTGGCCGCTCTGCGGGTTGGCGATCTGGAAAAGGTTCAGAAGCTGGAAGCAGAGCTGGAAAAGGCAGCTACCCACCGGCACAGCTATGAAGAGAAGGGCCGCAGATACAGGGACACAGTGGAGGAG
Seq A exon
AGGTTGTCAAAGCTGCAGAAGCACAATGCAGAGCTGGAGCTGCAGAGAGAGCGAGCAGAGCAGATGCTGCAAGAGAAGTCTGAGGAGCTAAAAG
Seq C2 exon
ATGATCCCAGACTTTAAGCAGCAGATTTCAGAGCTGGAGAGGCAGAAGCAGGATCTTGAATCCCGCCTGAAGGAGCAGGCTGAGAAGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590_MULTIEX2-9/27=8-16
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.309 A=0.531 C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF131661=AAA_13=FE(16.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGAGCTGGAAAAGGCA
R:
TCTTCTCAGCCTGCTCCTTCA
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: