BtaEX6053675 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58232095-58234482:+
Coord C1 exon
chr10:58232095-58232259
Coord A exon
chr10:58233510-58233603
Coord C2 exon
chr10:58234419-58234482
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCTTCCCTTTGCTAGAAA
3' ss Score
8.17
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AACAAAGAGAACCATGGGCTGGTGGAGAAGCTGACCAGCCTGGCTGCCCTTCGGGCCGGTGACGTGGAGAAGATTCAGAAACTGGAATCTGAACTGGACAGAGCAGCCGCCCACAGGCAGAATTATGAGGAGAAGGGGATGAGATACAGGGCTTCCGTGGAAGAG
Seq A exon
AAACTGGCAAAGCTTCAGAAGCATAATTCAGAATTGGAAATACAGAAAGAACAAATACAGCTGAAGCTTCAAGAGAAGACTGAAGAGTTGAAAG
Seq C2 exon
AAAAAATGGATAACCTCACCAAGCAGCTCTTTGATGATGTGCGAAAAGAAGAACAACAAAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763-'33-38,'33-37,34-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.062 C2=0.136
Domain overlap (PFAM):
C1:
PF131661=AAA_13=PU(20.8=83.6)
A:
PF131661=AAA_13=FE(14.0=100)
C2:
PF131661=AAA_13=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGAGAAGCTGACCAG
R:
CAAAGAGCTGCTTGGTGAGGT
Band lengths:
180-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]