DreEX6100641 @ danRer10
Exon Skipping
Gene
ENSDARG00000104235 | myo5c
Description
myosin VC [Source:ZFIN;Acc:ZDB-GENE-131127-196]
Coordinates
chr25:4682472-4682942:+
Coord C1 exon
chr25:4682472-4682636
Coord A exon
chr25:4682713-4682806
Coord C2 exon
chr25:4682879-4682942
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTCTTCTCTCGAAGGCA
3' ss Score
8.46
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AATAAAGAGAACTGTGGCCTGATGGAGAAACTCACCAGCTTGTCTAACGCACGGGCTCAAGGGTTAGAAAAGATTCAGGCTCTGGAGGCGGAGCTGGGAAAACTGACCAATGAGATGTCAGCTTTAGTGCAGAGGGCGAAAACAAACTCAGAGGAGGCCAATCAG
Seq A exon
GCAATCGATGTGCTTCAGAATGACAAAGAGAAGCTTGTTGAGGAAAATAAGGCTTTGGAGCGGAAACTCAAAGATACGACTGTGCAGATGCAAG
Seq C2 exon
ATCAATTTGAGGATGTGAAGCGGAAGCTGATGGAAGATTTAGAAAGAGAGGAAAGACTAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104235-'24-30,'24-29,25-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.312 C2=0.409
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCAGCTTGTCTAACGCAC
R:
CCATCAGCTTCCGCTTCACAT
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]