RnoEX0057438 @ rn6
Exon Skipping
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82225326-82227767:+
Coord C1 exon
chr8:82225326-82225506
Coord A exon
chr8:82227454-82227547
Coord C2 exon
chr8:82227704-82227767
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGGGTTTGGCTCTGCTTTAGACC
3' ss Score
5.65
5' ss Seq
GAGGTACCA
5' ss Score
6.43
Exon sequences
Seq C1 exon
ACTTCTTGAAAAAAGTTTTGAGCTGAAAACACAAGCTTATGAGAAAGAGATAGAGTCTCTGAGAGAAGAAATTAAAGCCCTCAAGGATGAGAGGACGCAGCTGCACCACCAGCTGGAGGAGGGACGGGTCACCTCTGACAGCCTGAAGGGGGAGGTGGCCCGTCTAAGCAAGCAGGCAAAG
Seq A exon
ACCATCTCTGAGTTTGAGAAGGAGATAGAACTGCTGCAGGCACAGAAGATAGATGTGGAAAAACATGTGCAGTCACAGAAGCGGGAGATGAGAG
Seq C2 exon
AACGGATGTCAGAGGTCACCAAGCAACTTTTGGAGAGCTATGACATTGAAGACGTTAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=0.250 C2=0.045
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(25.1=100)
A:
PF131661=AAA_13=FE(13.0=100)
C2:
PF131661=AAA_13=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAAAACACAAGCTTATGAGA
R:
TGGTGACCTCTGACATCCGTT
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]