HsaEX6074819 @ hg38
Exon Skipping
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52225075-52229313:-
Coord C1 exon
chr15:52229133-52229313
Coord A exon
chr15:52225439-52225532
Coord C2 exon
chr15:52225075-52225138
Length
94 bp
Sequences
Splice sites
3' ss Seq
CCGTCATTGCTGTGATTCAGACA
3' ss Score
5.15
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
GCTTCTTGAAAAAAGTTTTGAACTGAAAACACAAGACTATGAGAAGCAGATTCAGTCTTTGAAAGAAGAAATTAAAGCTCTCAAGGATGAGAAGATGCAACTCCAACACCTGGTGGAGGGGGAGCACGTCACTTCTGATGGCTTGAAGGCGGAAGTGGCCCGCCTGAGCAAGCAGGTCAAG
Seq A exon
ACAATCTCTGAGTTCGAAAAAGAGATAGAACTACTTCAGGCACAGAAGATAGATGTGGAGAAACATGTGCAGTCACAAAAACGGGAAATGAGAG
Seq C2 exon
AAAAGATGTCAGAGATCACCAAACAACTTCTCGAAAGCTATGACATTGAAGATGTAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833-'53-48,'53-47,55-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.250 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000261839fB20591
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAGCAGATTCAGTCTTTGA
R:
GCTTTCGAGAAGTTGTTTGGTGA
Band lengths:
180-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains