MmuEX0030544 @ mm10
Exon Skipping
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75281836-75284210:+
Coord C1 exon
chr9:75281836-75282016
Coord A exon
chr9:75283893-75283986
Coord C2 exon
chr9:75284147-75284210
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTTTGCGGCTCTGATTTAGACC
3' ss Score
5.88
5' ss Seq
GAGGTACCA
5' ss Score
6.43
Exon sequences
Seq C1 exon
AGTTCTTGAAAAAGGTTTTGAGCTGAAAACACAAGCCTATGAGAAACAGATAGAGTCTCTGAGAGAAGAGATTAAAGCCCTCAAGGACGAGAGGTCGCAACTGCATCACCAGCTGGAGGAGGGACAGGTCACCTCTGACCGCCTGAAGGGGGAGGTGGCCCGCCTAAGCAAGCAGGCAAAG
Seq A exon
ACCATCTCTGAGTTTGAGAAGGAGATAGAGCTGCTGCAAGCCCAGAAGATAGATGTGGAAAAGCACGTGCAGTCACAGAAACGGGAGATGAGAG
Seq C2 exon
AACGGATGTCAGAGGTCACCAAGCAGCTTTTGGAGAGCTATGACATCGAAGATGTTAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590-'45-39,'45-38,47-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=0.250 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000036555fB13274
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAAAACACAAGCCTATGAGA
R:
TGGTGACCTCTGACATCCGTT
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types