GgaEX1038147 @ galGal4
Exon Skipping
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8351953-8353743:+
Coord C1 exon
chr10:8351953-8352133
Coord A exon
chr10:8352728-8352821
Coord C2 exon
chr10:8353680-8353743
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTAATTTCTGTCTGATTCAGAAA
3' ss Score
8.17
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
GATACTTGAGAAAAACTTCCAGAACCAGAGACAAGACTACGAAAAGGAAATTGAATCGCTCAAGGGAGAAATAAAGGTTCTCAGAGAAGAAAAAACGCAGCTACAGCAACAAATTCAGCAAGAGATGAGCATTCAGGATGACCTGAAAATGGAAGTAGGACAACTTACAAAACAAGTGCAG
Seq A exon
AAAATACCTGAGTTGCAAAAGGAAATTGAACTGCTGCAGACACAAAAATTGGATGTTGAAAAACAGGCCCAGTCACAGAAGAGGGAGATGAGGG
Seq C2 exon
AAAAGATGTCAGAAGTTACAAAGCAGCTTCTTGAAAGCTATGATTTTGAAGATGTAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641-'29-29,'29-28,30-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=0.375 C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAAAGGAAATTGAATCGCTCA
R:
AGCTGCTTTGTAACTTCTGACA
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]