DreEX6084459 @ danRer10
Exon Skipping
Gene
ENSDARG00000062003 | myo5b
Description
myosin VB [Source:ZFIN;Acc:ZDB-GENE-031219-7]
Coordinates
chr21:22439513-22442853:-
Coord C1 exon
chr21:22442617-22442853
Coord A exon
chr21:22441556-22441640
Coord C2 exon
chr21:22439513-22439658
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTTTCCTTTCGCAGAGG
3' ss Score
11.97
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
TCAAAAGAGTTAAAATCTCAGAACGAAAATCTGGCTGTTGCTAAAACTGTTCTGGAGACAGAGGTTAGTAAGCTGAGCAAAGAGCTGGAGACCCTCCGCACTCGACAGGTGGCTGGCACTCAGATGACATCACTGCAGGAAGAGCTGGAGAAACTGAGGGCGGAGCTTCAGGAAGCACATGCCCACAAGAAACTTTTGGAGGAGGAGTTCAGCAACGAGAAGCAAGGACTCGAACAG
Seq A exon
AGGGTGGAGGAGCTTGAGAAAGAAAACACAGTCTTGAAGAAGGAAAAAGAAGAGATGAACCGCAGAATCCAAACCTCTACTCAGG
Seq C2 exon
ATCAGGGAGGTGATGTGTCTCAGAAGGAGAGTCGCCTGCAGCATGAACTGGATGACGAGAGACAACGATATCAGAACCTGGTGAAAGAATATTCCCGACTGGAGCAGAGATACGAAAACCTGCAGGAGGACATGTCTTCAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062003-'25-24,'25-23,26-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.608 A=1.000 C2=0.898
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACTGCAGGAAGAGCTGG
R:
TCGTCATCCAGTTCATGCTGC
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]