RnoEX6059255 @ rn6
Exon Skipping
Gene
ENSRNOG00000014104 | Myo5b
Description
myosin Vb [Source:RGD Symbol;Acc:621347]
Coordinates
chr18:70678578-70686093:+
Coord C1 exon
chr18:70678578-70678811
Coord A exon
chr18:70684750-70684834
Coord C2 exon
chr18:70685960-70686093
Length
85 bp
Sequences
Splice sites
3' ss Seq
TACCTGTTGATCTCTTTCAGCGA
3' ss Score
8.82
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AACAAAGAGTTCAAGACTCTGTCAGAGCAGTTGTCTGCAGTTACCTCCACCCATGCCATGGAGGTGGAGAAGCTGAAGAAGGAGCTGGCGCGTTACCAGCAGAACCAGGAGGCTGACCCCAGCCTTCAGCTGCAGGAGGAGGTACAGAGCCTGCGCACCGAACTACAGAAGGCTCATTCGGAGCGCAGGGTCCTAGAGGATACTCACAACAGGGAGAATGGTGAACTGAGAAAG
Seq A exon
CGAGTCGCAGACCTGGAACATGAAAATGCACTCTTGAAGGATGAGAAAGAACACCTTAACAACCAAATCCTGCGCCAGTCAAAAG
Seq C2 exon
CTGAATCTTCACAGAGCTCTGTGGAGGAAAACCTGCTGATTAAGAAGGAACTGGAGGAGGAACGGTCCCGGTACCAGAACCTCGTGAAGGAGTACTCCCAGCTGGAGCAGAGATATGAGAACCTTCGGGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014104-'43-33,'43-32,44-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.731 A=1.000 C2=0.644
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCGAACTACAGAAGGCTC
R:
ACTCCTTCACGAGGTTCTGGT
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]