BtaEX0023578 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58238330-58243182:+
Coord C1 exon
chr10:58238330-58238510
Coord A exon
chr10:58242738-58242831
Coord C2 exon
chr10:58243119-58243182
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTGTCATTGCTGGGATTCAGACG
3' ss Score
3.6
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
ACTTCTTGAAAAAAGTTTTGAACTGAAAACACAAGACTATGAGAAGCAGATCCGGTCCTTGAAAGAAGAAATTAAAGCTCTCAAGGATGAGAAGATGCAACTACAGCATCAGCTAGAAGAAGAGCGGGTCACCTCTGATGACCTGAAAGGAGAAGTGGCCTGGCTGAGCAAGCAGGCAAAG
Seq A exon
ACGATCTCTGAGTTTGAAAAGGAGATAGAGTTACTTCAGACACAGAAGATAGACGTGGAAAAACATGTGCAGTCCCAGAAAAGGGAAATGAGAG
Seq C2 exon
AAAAGATGTCAGAGATCACCAGACAACTTCTTGAGAGCTATGACATTGAAGATGTAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763_MULTIEX1-16/27=15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.250 C2=0.045
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(27.1=100)
A:
PF131661=AAA_13=FE(14.0=100)
C2:
PF131661=AAA_13=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCAGATCCGGTCCTTGA
R:
AGCTCTCAAGAAGTTGTCTGGTG
Band lengths:
179-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development