BtaEX6093419 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009155 | SCN5A
Description
Bos taurus sodium channel, voltage-gated, type V, alpha subunit (SCN5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174458]
Coordinates
chr22:12089882-12101847:-
Coord C1 exon
chr22:12101522-12101847
Coord A exon
chr22:12098733-12098851
Coord C2 exon
chr22:12089882-12089971
Length
119 bp
Sequences
Splice sites
3' ss Seq
AAGTGGCTCTCTGTCCGCAGACC
3' ss Score
10.25
5' ss Seq
TTCATATCC
5' ss Score
-14.87
Exon sequences
Seq C1 exon
CTTCCCTTCAGGCAGTGTGAGGACAGCCTGTGCCCCAGAAGCAGGATGAGAAGATGGCAGCCTTCCTGTTACCTCGGGGCACCAGCAGCTTCCGCAGGTTCACCCGGGAGTCTCTGGCGGCCATCGAGAAGCGCATGGCAGAGAAGCAGGCCCGGAGCTCGGCCGCCTCGCAGGAGAGCCGCGACGGGCTGCCCGAGGAGGAGGCGCCCCGGCCCCAGCTGGACCTGCAAGCCTCCAAAAAGCTGCCGGATCTCTACGGCAACCCACCCCGAGAGCTCATCGGGGAGCCCCTGGAGGACCTGGACCCCTTCTATAGCACTCAAAAG
Seq A exon
ACCTTCATCGTCCTGAACAAAGGCAAGACCATCTTCCGGTTCAGCGCCACCAACGCCTTGCATGTCCTCAGCCCCTTCCACCCCATCCGGAGAGTGGCTGTGAAGATCTTGGTGCATTC
Seq C2 exon
GCTCTTCAGCATGCTCATCATGTGTACCATTCTGACCAACTGCGTGTTCATGGCCCAGCACGACCCTCCGCCCTGGACCAAATATGTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009155-'1-4,'1-2,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.8=6.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCAGAGAAGCAGGCC
R:
CCATGAACACGCAGTTGGTCA
Band lengths:
246-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]