DreEX6029412 @ danRer10
Exon Skipping
Gene
ENSDARG00000090724 | scn12aa
Description
sodium channel, voltage gated, type XII, alpha a [Source:ZFIN;Acc:ZDB-GENE-060908-2]
Coordinates
chr2:52405416-52427287:-
Coord C1 exon
chr2:52427021-52427287
Coord A exon
chr2:52420407-52420525
Coord C2 exon
chr2:52405416-52405505
Length
119 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTTTTTTTTTACAGACC
3' ss Score
11.76
5' ss Seq
TTCATATCC
5' ss Score
-14.87
Exon sequences
Seq C1 exon
ATGGCGACCATGCTCTTACCAGCGGGTCCTGATGGCTTGCGACCGTTCACTCGAGAGTCTCTGGCGGCCATCGAGCAGAGGATCAGCGAAGAGCGGGCCAGGAACACTAAGGATTACAAGGCGGACCCCGGGGATGTGGAGGAGCCCAAACCCCGCGCTGACCTGGAGGTCGGGAAGGTGCTGCCTCGCATCTTTGGAGAAATCCCTGCCGGACTGGTTGGAGTCCCGCTGGAGGACATCGACCCATTCTACTTCAGAAATCAGAAG
Seq A exon
ACCTTTATAGTACTAAACAAGGGAAAAGCCATCTTCCGCTTCAGTGCCACATCTGCACTCTACATATTCAGTCCCTTTCACTGCATTAGAAGAATCTCCATCCGAATCCTCGTCCATTC
Seq C2 exon
TTTGTTTAGCTTGTTCATCATGTGCACTATTTTGACAAACTGCTGCTTCATGGCGATGTCAGATCCTCCTCTCTGGACCAAATACCTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090724-'0-2,'0-0,3-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF074717=Phage_Nu1=WD(100=70.8)
A:
NO
C2:
PF0052026=Ion_trans=PU(0.8=7.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAGCAGAGGATCAGCGAA
R:
ATCGCCATGAAGCAGCAGTTT
Band lengths:
255-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]