MmuEX6069766 @ mm10
Exon Skipping
Gene
ENSMUSG00000032511 | Scn5a
Description
sodium channel, voltage-gated, type V, alpha [Source:MGI Symbol;Acc:MGI:98251]
Coordinates
chr9:119551986-119562678:-
Coord C1 exon
chr9:119562352-119562678
Coord A exon
chr9:119560262-119560380
Coord C2 exon
chr9:119551986-119552075
Length
119 bp
Sequences
Splice sites
3' ss Seq
ACAGTTCCCTCTGTCCACAGACC
3' ss Score
11.57
5' ss Seq
TTCATATCC
5' ss Score
-14.87
Exon sequences
Seq C1 exon
CTTCCTTCCAGGCAGCCTGAGGAGAGCCTGTGCCCCCAGAAGCAGGATGAGAAGATGGCAAACTTCCTGTTACCTCGGGGCACCAGCAGCTTCCGTAGGTTCACCCGGGAGTCACTGGCGGCCATCGAGAAGCGCATGGCTGAAAAACAAGCCCGTGGTTCGGCCACCTCACAGGAGAGCCGTGAGGGCCTGCCAGAGGAGGAGGCTCCCCGGCCCCAGCTGGACCTACAGGCCTCCAAAAAGCTGCCAGATCTCTATGGCAACCCACCCCGAGAGCTCATTGGGGAGCCCCTGGAAGACCTGGACCCTTTCTATAGTACCCAGAAG
Seq A exon
ACCTTCATCGTGCTGAATAAGGGCAAAACCATCTTCCGGTTCAGTGCCACCAATGCCTTGTACGTCCTCAGCCCCTTCCACCCGGTGCGCAGAGCGGCTGTGAAGATTTTGGTACATTC
Seq C2 exon
GCTCTTCAGCATGCTCATCATGTGCACCATCCTAACCAACTGTGTGTTCATGGCACAACACGACCCTCCGCCTTGGACCAAATATGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032511-'6-4,'6-3,8-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.363 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.8=6.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCTGAAAAACAAGCCCG
R:
TGCCATGAACACACAGTTGGT
Band lengths:
248-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types