BtaEX6094556 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013117 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr22:46643535-46646048:-
Coord C1 exon
chr22:46646003-46646048
Coord A exon
chr22:46645747-46645844
Coord C2 exon
chr22:46643535-46643628
Length
98 bp
Sequences
Splice sites
3' ss Seq
GGGCCATGTCACATTCCTAGGTC
3' ss Score
6.01
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GCCTGCATGACTTAGAACACCCTGATGTGTCCTTGGCAGACGAATG
Seq A exon
GTCCTACTGCAACACTGACCTACACCCAGAGCACCGTCATCTGTCTCAGCTAGAAGCTATTAAACTCTACCTCAAAGGCAAAGAACCTCTGCTCCAAT
Seq C2 exon
GTGATAAAGAATTGATACAGGAAGTCCTTTTTGATGCCGTGGTGAGTGCTCCCATTGAAGCCTATTGGACCAGCCTTGCCCTCAACAAATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013117-'20-19,'20-18,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCATGACTTAGAACACCC
R:
ATTTGTTGAGGGCAAGGCTGG
Band lengths:
136-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]