RnoEX6054565 @ rn6
Exon Skipping
Gene
ENSRNOG00000031287 | Cacna2d3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:RGD Symbol;Acc:631361]
Coordinates
chr16:5116911-5119301:-
Coord C1 exon
chr16:5119256-5119301
Coord A exon
chr16:5119013-5119110
Coord C2 exon
chr16:5116911-5117004
Length
98 bp
Sequences
Splice sites
3' ss Seq
GGACCCTGTCCTATTCTTAGGTC
3' ss Score
7.66
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGCTCCATGACTTAGAACATCCTGACGTGTCCTTGGCAGATGAATG
Seq A exon
GTCCTACTGCAACACTGATCTGCACCCAGAGCACCGCCATCTCTCTCAACTGGAAGCGATTAAGCTCTACCTCAAAGGCAAGGAGCCTCTGCTTCAAT
Seq C2 exon
GTGACAAAGAATTGATTCAAGAAGTCCTTTTTGATGCTGTGGTAAGCGCCCCTATCGAAGCCTATTGGACCAGCCTGGCCCTCAACAAATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031287-'34-39,'34-38,36-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCATGACTTAGAACATCCTG
R:
TCAGATTTGTTGAGGGCCAGG
Band lengths:
140-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]