GgaEX6010228 @ galGal3
Exon Skipping
Gene
ENSGALG00000005400 | CACNA2D3
Description
NA
Coordinates
chr12:7875581-7876762:+
Coord C1 exon
chr12:7875581-7875626
Coord A exon
chr12:7875774-7875871
Coord C2 exon
chr12:7876669-7876762
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTTTACAATATGTTCTCAGGTC
3' ss Score
7.93
5' ss Seq
AATGCAAGT
5' ss Score
0.87
Exon sequences
Seq C1 exon
GTTTACATGATTTAGAACACCCTGATGTATCTTTAGCAGATGAATG
Seq A exon
GTCCTACTGCAACACTGACTTGCATCCTGAACACCGTCAAATGACTCAGTTAGAAGCAATTAAACGCTACCTCACAGGAAAAGAGCCATTGCTCCAAT
Seq C2 exon
GTGATAAAGAATTGATCCAGGAAGTTCTGTTTGATGCAGTGGTGAGTGCACCAATTGAAGCTTATTGGACCAGTTTAGCACTAAATAAATCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATGATTTAGAACACCCTGATGT
R:
TGATTTATTTAGTGCTAAACTGGTCC
Band lengths:
135-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]