MmuEX6040218 @ mm9
Exon Skipping
Gene
ENSMUSG00000021991 | Cacna2d3
Description
calcium channel, voltage-dependent, alpha2/delta subunit 3 [Source:MGI Symbol;Acc:MGI:1338890]
Coordinates
chr14:29869073-29871833:-
Coord C1 exon
chr14:29871788-29871833
Coord A exon
chr14:29871533-29871630
Coord C2 exon
chr14:29869073-29869166
Length
98 bp
Sequences
Splice sites
3' ss Seq
GGACCCTGTCCCATTCTTAGGTC
3' ss Score
8.01
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GCCTCCATGACTTAGAACATCCTGACGTGTCCTTGGCAGATGAATG
Seq A exon
GTCCTACTGCAACACTGACCTGCACCCAGAGCACCGCCATCTATCTCAACTGGAAGCCATTAAGCTCTACCTCAAAGGCAAGGAGCCTCTGCTTCAAT
Seq C2 exon
GTGACAAAGAATTGATTCAAGAAGTCCTTTTTGATGCTGTGGTGAGCGCCCCTATTGAAGCCTATTGGACGAGCCTGGCCCTCAACAAATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021991-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCATGACTTAGAACATCCTG
R:
GATTTGTTGAGGGCCAGGCTC
Band lengths:
137-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: