GgaEX6010228 @ galGal4
Exon Skipping
Gene
ENSGALG00000005400 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr12:7635847-7637028:+
Coord C1 exon
chr12:7635847-7635892
Coord A exon
chr12:7636040-7636137
Coord C2 exon
chr12:7636935-7637028
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTTTACAATATGTTCTCAGGTC
3' ss Score
7.93
5' ss Seq
AATGCAAGT
5' ss Score
0.87
Exon sequences
Seq C1 exon
GTTTACATGATTTAGAACACCCTGATGTATCTTTAGCAGATGAATG
Seq A exon
GTCCTACTGCAACACTGACTTGCATCCTGAACACCGTCAAATGACTCAGTTAGAAGCAATTAAACGCTACCTCACAGGAAAAGAGCCATTGCTCCAAT
Seq C2 exon
GTGATAAAGAATTGATCCAGGAAGTTCTGTTTGATGCAGTGGTGAGTGCACCAATTGAAGCTTATTGGACCAGTTTAGCACTAAATAAATCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400-'29-31,'29-30,30-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATGATTTAGAACACCCTGATGT
R:
TGATTTATTTAGTGCTAAACTGGTCC
Band lengths:
135-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]