BtaEX6095492 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018928 | QARS
Description
glutamine--tRNA ligase [Source:RefSeq peptide;Acc:NP_001029640]
Coordinates
chr22:51486765-51488106:+
Coord C1 exon
chr22:51486765-51486836
Coord A exon
chr22:51487764-51487849
Coord C2 exon
chr22:51488020-51488106
Length
86 bp
Sequences
Splice sites
3' ss Seq
GCTTGTTCTGGCCCTGGCAGGTG
3' ss Score
8.61
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTGAGGTTGTTGTTCAGACCCTGTCTCTGATGGAGCAGCTCCGAGGCGAGGCACTTAAGTTCCACAAACCTG
Seq A exon
GTGAGAACTACAAGACCCCGGGCTATGTGACCACTCCTCATACCATGGATCTACTGAAGCAGCACCTGGACATCACCGGAGGACAG
Seq C2 exon
GTTCGTACCCGGTTCCCGCCAGAACCCAATGGAATCCTGCACATTGGACATGCCAAAGCAATCAATTTCAATTTTGGCTATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018928-'13-9,'13-8,14-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.138 C2=0.103
Domain overlap (PFAM):
C1:
PF0455710=tRNA_synt_1c_R2=FE(25.8=100)
A:
PF0455710=tRNA_synt_1c_R2=PD(22.6=72.4),PF0074916=tRNA-synt_1c=PU(0.1=0.0)
C2:
PF0074916=tRNA-synt_1c=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTGTTGTTCAGACCCTGT
R:
GCATAGCCAAAATTGAAATTGATTGC
Band lengths:
152-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]