Special

HsaEX0051456 @ hg19

Exon Skipping

Gene
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:9751]
Coordinates
chr3:49138788-49139332:-
Coord C1 exon
chr3:49139261-49139332
Coord A exon
chr3:49139053-49139138
Coord C2 exon
chr3:49138788-49138874
Length
86 bp
Sequences
Splice sites
3' ss Seq
GCTTATTCTGGTCCTGGCAGGTG
3' ss Score
8.62
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCGAGACTGCTGACCAGACCCTGTCTCTGATGGAGCAGCTCCGGGGGGAGGCCCTTAAGTTCCACAAGCCTG
Seq A exon
GTGAGAACTACAAGACCCCAGGCTATGTGGTCACTCCACACACCATGAATCTACTAAAGCAGCACCTGGAGATTACTGGTGGGCAG
Seq C2 exon
GTACGTACCCGGTTCCCGCCAGAACCCAATGGAATCCTGCATATTGGACATGCCAAAGCCATCAATTTCAACTTTGGCTATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.200 A=0.021 C2=0.069
Domain overlap (PFAM):

C1:
PF0455710=tRNA_synt_1c_R2=FE(25.8=100)
A:
PF0455710=tRNA_synt_1c_R2=PD(22.6=72.4),PF0074916=tRNA-synt_1c=PU(0.1=0.0)
C2:
PF0455710=tRNA_synt_1c_R2=PD(7.7=20.0)


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGACTGCTGACCAGAC
R:
AGCCAAAGTTGAAATTGATGGCT
Band lengths:
151-237
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development