MmuEX6068940 @ mm9
Exon Skipping
Gene
ENSMUSG00000032604 | Qars
Description
glutaminyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:1915851]
Coordinates
chr9:108413470-108413949:+
Coord C1 exon
chr9:108413470-108413541
Coord A exon
chr9:108413662-108413747
Coord C2 exon
chr9:108413863-108413949
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTCTATTCTGATCCTGGCAGGTG
3' ss Score
8.47
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTGAAGTGGCTGGCCAGACCCTGTCTCTGATGGAGCAGCTCCGGGGGGAGGCACTTAAGTTTCATAAGCCAG
Seq A exon
GTGAGAACTACAAGACGCCAGGCTATGTGATCACTCCATATACCATGGATCTGCTGAAGCAGCACCTGGAGATCACTGGGGGACAG
Seq C2 exon
GTACGTACGCGGTTCCCTCCAGAGCCCAATGGAATCCTGCATATTGGACACGCCAAAGCCATCAATTTCAACTTTGGTTATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032604-'10-15,'10-14,11-15=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0455710=tRNA_synt_1c_R2=FE(25.8=100)
A:
PF0455710=tRNA_synt_1c_R2=PD(22.6=72.4),PF0074916=tRNA-synt_1c=PU(0.1=0.0)
C2:
PF0074916=tRNA-synt_1c=FE(9.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACCCTGTCTCTGATGGA
R:
GGCATAACCAAAGTTGAAATTGATGG
Band lengths:
143-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: